Selection of p-nitrophenyl fatty acid substrate suitable for detecting changes in soil esterase activity associated with degradation of biodegradable polyester mulch films: A field trial

Submitted: 17 January 2022
Accepted: 1 May 2022
Published: 7 July 2022
Abstract Views: 5233
PDF: 837
HTML: 241
Publisher's note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

Authors

  • Shun Tsuboi Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
  • Kimiko Yamamoto-Tamura kimtam@affrc.go.jp Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
  • Atsushi Takada Kanagawa Agricultural Technology Center, Hiratsuka, Japan.
  • Seiichiro Yonemura Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
  • Yuko Takada Hoshino Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
  • Hiroko Kitamoto Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
  • Ayaka Wenhong Kishimoto-Mo Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan.

This study aimed to develop a method for detecting microbial activity based on soil esterase activity during the biodegradation of polyester biodegradable mulch films after ploughing the field. Herein, we report that the p-nitrophenyl butyrate (pNP–C4) substrate, among five pNP fatty acid substrates [pNP–acetate (C2), – C4, –hexanoate (C6), –decanoate (C10), and –dodecanoate (C12)] in a cultivated field, is a specific indicator for detecting microbial activity associated with biodegradation of biodegradable polyesters. To evaluate film degradation by loss of weight and visual area, pieces of three different films were placed independently in meshed plastic bags and buried in a cultivated field in Japan for seven months. One was made from poly(butylene succinate-co-adipate) (PBSA), and two were (poly(butylene terephthalate-co-adipate) and poly(butylene succinate)-type polymer)- based commercial biodegradable mulch films (hereafter described as films A and B) and weathered for three months in the cultivated field. The soil adhered to the mesh bag and film was retrieved and mixed, and their esterase activities were measured using the five pNP fatty acid substrates. From the loss of visual area, the time taken from burial to accelerated degradation increased, in the order of PBSA, film A, and film B. The reproducibility of the hydrolytic activity values of pNP–C2, –C4, and –C6 in bulk soil were considered sufficient to measure baselines for the enzymatic activities. Among these substrates, the hydrolytic activity of pNP– C4 was significantly higher in the degradation process of PBSA and film A. In addition, unlike the pNP–C2 and –C6, the hydrolytic activity of the pNP–C4 in the bulk soil was not affected by changes in soil temperature and moisture under the conditions of this experiment. Therefore, the pNP–C4 hydrolytic activity can aid in the detection of the microbial activity associated with the biodegradation of polyester-based biodegradable mulch films in cultivated field soils.

Highlights
- Biodegradable poly(butylene succinate-co-adipate) and two commercial films had different field degradation rates.
- Five p-nitrophenyl (pNP) fatty acid substrates were investigated to evaluate esterase activity in the soils.
- Three pNP substrates with shorter acyl chains could stably indicate an increase in hydrolytic activity with film degradation.
- In these substrates, the hydrolytic activities of pNP-acetate and -hexanoate were related to soil temperature and moisture, respectively.
- The hydrolytic activity of pNP-butyrate was a suitable indicator of the microbial activity associated with the film degradation.

Dimensions

Altmetric

PlumX Metrics

Downloads

Download data is not yet available.

Citations

Bondopadhyay S, Martín-Closas L, Pelacho AM, DeBruyn JM, 2018. Biodegradable plastic mulch films: Impacts on soil microbial communities and ecosystem functions. Front. Microbiol. 9:819.
Breslow R, 1991. Hydrophobic effects on simple organic reactions in water. Acc. Chem. Res. 24:159-163.
Briassoulis D, 2007. Analysis of the mechanical and degradation performances of optimised agricultural biodegradable films. Polym. Degrad. Stab. 92:1115-32.
Francioni M, Kishimoto-Mo AW, Tsuboi S, Hoshino Takada Y. Evaluation of the mulch films biodegradation in soil: a methodological review. Ital. J. Agron. 17:1936.
Hayes DG, Wadsworth LC, Sintim HY, Flury M, English M, Schaeffer S, Saxton AM, 2017. Effect of diverse weathering conditions on the physicochemical properties of biodegradable plastic mulches. Polym. Test. 62:454-67.
ISO 17556, 2019. Plastics-determination of the ultimate aerobic biodegradability in soil by measuring the oxygen demand in a respirometer or the amount of carbon dioxide evolved. Geneva: ISO.
Kader MA, Senge M, Mojid MA, Ito K, 2017. Recent advances in mulching materials and methods for modifying soil environment. Soil Tillage Res. 168:155-66.
Li C, Moore-Kucera J, Miles C, Leonas K, Lee J, Corbin A, Inglis D, 2014. Degradation of potentially biodegradable plastic mulch films at three diverse U.S. locations. Agroecol. Sustain. Food Syst. 38:861-89.
Maeda H, Yamagata Y, Abe K, Hasegawa F, Machida M, Ishioka R, Gomi K, Nakajima T, 2005. Purification and characterization of a biodegradable plastic-degrading enzyme from Aspergillus oryzae. Appl. Microbiol. Biotechnol. 67:778-88.
Martín-Closas L, Costa J, Pelacho AM, 2017. Agronomic effects of biodegradable films on crop and field environment. In: M. Malinconico (Ed.), Soil degradable bioplastics for a sustainable modern agriculture. Springer, Berlin, Germany, pp 67-104.
Miles C, DeVetter L, Ghimire S, Hayes DG, 2017. Suitability of biodegradable plastic mulches for organic and sustainable agricultural production systems. HortSci. 52:10-15.
Moreno MM, González-Mora S, Villena J, Campos JA, Moreno C, 2017. Deterioration pattern of six biodegradable, potentially low-environmental impact mulches in field conditions. J. Environ. Manage. 200:490-501.
Ngouajio M, Auras R, Fernandez RT, Rubino M, Counts JW, Kijchavengkul T, 2008. Field performance of aliphatic-aromatic copolyester biodegradable mulch films in a fresh market tomato production system. Horttech. 18:605-10.
Oda, Y, Yonetsu, A, Urakami, T, Tonomura K, 2000. Degradation of polylactide by commercial proteases. J. Polym. Environ. 8:29-32.
Pandey A, Nigam P, Soccol CR, Soccol VT, Singh D, Mohan R, 2000. Advances in microbial amylases. Biotechnol. Appl. Biochem. 31:135-52.
Park S, Venditti RA, Abrecht DG, Jameel H, Pawlak JJ, Lee JM, 2007. Surface and pore structure modification of cellulose fibers through cellulase treatment. J. App. Polymer Sci. 103:3833-9.
Qin M, Chen C, Song B, Shen M, Cao W, Yang H, Zeng G, Gong J, 2021. A review of biodegradable plastics to biodegradable microplastics: Another ecological threat to soil environments? J. Clean. Prod. 312:127816.
Sakai Y, Isokawa M, Masuda T, Yoshioka H, Hayatsu M, Hayano K, 2002. Usefulness of soil p-nitrophenyl acetate esterase activity as a tool to monitor biodegradation of polybutylene succinate (PBS) in cultivated soil. Polym. J. 34:767-74.
Sameshima-Yamashita Y, Ueda H, Koitabashi M, Kitamoto H, 2019. Pretreatment with an esterase from the yeast Pseudozyma antarctica accelerates biodegradation of plastic mulch film in soil under laboratory conditions. J. Biosci. Bioeng. 127:93-8.
Sander M, 2019. Biodegradation of polymeric mulch films in agricultural soils: Concepts, knowledge gaps, and future research directions. Environ. Sci. Technol. 53:2304-15.
Shinozaki Y, Kikkawa Y, Sato S, Fukuoka T, Watanabe T, Yoshida S, Nakajima-Kambe T, Kitamoto HK, 2013. Enzymatic degradation of polyester films by a cutinase-like enzyme from Pseudozyma antarctica: surface plasmon resonance and atomic force microscopy study. Appl. Microbiol. Biotechnol. 97:8591-8.
Sintim HY, Bary AI, Hayes DG, Wadsworth LC, Anunciado MB, English ME, Bandopadhyay S, Schaeffer SM, Debruyn JM, Miles CA, Reganold JP, Flury M, 2020. In situ degradation of biodegradable plastic mulch films in compost and agricultural soils. Sci. Total Environ. 727:138668.
Šnajdr J, Cajthaml T, Valášková V, Merhautová V, Petránková M, Spetz P, Leppänen K, Baldrian P, 2011. Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition. FEMS Microbiol. Ecol. 75: 291-303.
Sutton LD, Stout JS, Quinn DM, 1990. Dependence of transition-state structure on acyl chain length for cholesterol esterase catalyzed hydrolysis of lipid p-nitrophenyl esters. J. Am. Chem. Soc. 112:8398-403.
Tsuboi S, Tanaka T, Yamamoto-Tamura K, Kitamoto H, 2018. High-throughput method for the evaluation of esterase activity in soils. J. Microbiol. Met. 146:22-4.
Uchida H, Nakajima-Kambe T, Shigeno-Akutsu Y, Nomura N,Tokiwa Y, Nakahara T, 2000. Properties of a bacterium which degrades solid poly (tetramethylene succinate)-co-adipate, a biodegradable plastic. FEMS Microbiol. Lett. 189:25-9.
Wallace PW, Haernvall K, Ribitsch D, Zitzenbacher S, Schittmayer M, Steinkellner G, Gruber K, Guebitz GM, Birner-Gruenberger R, 2017. PpEst is a novel PBAT degrading polyesterase identified by proteomic screening of Pseudomonas pseudoalcaligenes. Appl. Microbiol. Biotechnol. 101:2291-303.
Yamamoto-Tamura K, Hiradate S, Watanabe T, Koitabashi M, Sameshima-Yamashita Y, Yarimizu T, Kitamoto H, 2015. Contribution of soil esterase to biodegradation of aliphatic polyester agricultural mulch film in cultivated soils. AMB Exp. 5:10.
Zumstein MT, Narayan R, Kohler HPE, McNeill K, Sander M, 2019. Dos and do nots when assessing the biodegradation of plastics. Environ. Sci. Technol. 53:9967-9.

How to Cite

Tsuboi, S., Yamamoto-Tamura, K., Takada, A., Yonemura, S., Takada Hoshino, Y., Kitamoto, H., & Kishimoto-Mo, A. W. (2022). Selection of <em>p</em>-nitrophenyl fatty acid substrate suitable for detecting changes in soil esterase activity associated with degradation of biodegradable polyester mulch films: A field trial. Italian Journal of Agronomy, 17(3). https://doi.org/10.4081/ija.2022.2040